
Studying the “dark matter” of genomes since 2017. PhD in single-cell RNA-sequencing. “Grand unified theory of cells,” hashing, sequencing weird creatures, STEM outreach. MIT, Broad Institute, UCSC, UCSD. Open science/data/source. Openly available draft manuscript for functional prediction of transcriptomic “dark matter” across species available here: Paper: https://www.biorxiv.org/content/10.1101/2021.07.09.450799v1 Code: https://github.com/czbiohub/scrnaseq-for-the-99-percent Avid open source software (OSS) contributor in Python and Nextflow langauges (https://github.com/olgabot). * Contributed to 17 OSS repos * Created 19 libraries, 7 in the last year Popular libraries: Sencha, creator https://github.com/czbiohub/sencha Sencha is a Python package for directly translating RNA-seq reads into coding protein sequence. Core member, nf-core https://nf-co.re/ https://github.com/nf-core/kmermaid (created), https://github.com/nf-core/rnaseq (contributed) Contributed to a community effort to collect a curated set of analysis pipelines built using Nextflow. Sourmash, maintainer https://github.com/dib-lab/sourmash Compute and compare MinHash signatures for DNA data sets. Seaborn, contributor https://github.com/mwaskom/seaborn Statistical data visualization using matplotlib. Prettyplotlib, creator https://github.com/olgabot/prettyplotlib Painlessly create beautiful matplotlib plots.
bridgebio.com
hhmi.org
ucsc.edu
mit.edu
broadinstitute.org
ucsd.edu
harvard.edu
San Francisco, California, United States
Founder/CEO
Seanome
• www.linkedin.com/company/seanome
Sep 2024 - Present
San Francisco, California, United States
Computational Biologist
BridgeBio
• www.linkedin.com/company/bridgebio
Jan 2022 - Sep 2024
San Francisco, California, United States
Hype Squad Captain / Brand Ambassador
Bay Area Panthers
• www.linkedin.com/company/bayareapanthers
Jan 2023 - Dec 2023
San Jose, California, United States
Advisor
Arcadia Science
• www.linkedin.com/company/arcadia-science
Jul 2021 - Oct 2021
San Francisco, California, United States
Bioinformatics Data Scientist II
Chan Zuckerberg Biohub
• www.linkedin.com/company/cz-biohub
May 2017 - Jul 2021
San Francisco Bay Area
Graduate Researcher
UC San Diego
• www.linkedin.com/company/ucsandiego
Sep 2012 - May 2017
San Diego, CA
Researcher
MIT Department of Brain and Cognitive Sciences
Jan 2010 - Jun 2010